1FV9

Crystal structure of human microurokinase in complex with 2-amino-5-hydroxy-benzimidazole

Structural Biology Knowledgebase: 1FV9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.248

Literature

Macromolecules
Sequence Display for 1FV9

Classification: BLOOD CLOTTING

Total Structure Weight: 27835.80

Macromolecule Entities
Molecule Chains Length Organism Details
UROKINASE A 245 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: B CHAIN (16-243)
Mutation: C120A
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
172
Query on 172

A 2-AMINO-5-HYDROXY-BENZIMIDAZOLE
C7 H7 N3 O
FNSYWIPPPFVBAV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
172 IC50: 10000 - 200000 nM (99) BindingDB

N/A in BindingMoad
IC50: 10000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.248
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.16 α = 90.00
b = 53.00 β = 90.00
c = 82.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-19
  • Released Date: 2000-10-18
  • Deposition author(s): Nienaber, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4