1FV1

STRUCTURAL BASIS FOR THE BINDING OF AN IMMUNODOMINANT PEPTIDE FROM MYELIN BASIC PROTEIN IN DIFFERENT REGISTERS BY TWO HLA-DR2 ALLELES

Structural Biology Knowledgebase: 1FV1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1FV1

Classification: IMMUNE SYSTEM

Total Structure Weight: 91663.20

Macromolecule Entities
Molecule Chains Length Organism Details
MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN A, D 181 Homo sapiens Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN B, E 190 Homo sapiens Gene Name(s): HLA-DRB5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MYELIN BASIC PROTEIN C, F 20 Homo sapiens Fragment: RESIDUES 86-105
Gene Name(s): MBP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.233
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.19 α = 90.00
b = 114.89 β = 90.90
c = 63.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-18
  • Released Date: 2000-09-27
  • Deposition author(s): Li, H., Mariuzza, A.R., Li, Y., Martin, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update