1FT4

PHOTOCHEMICALLY-ENHANCED BINDING OF SMALL MOLECULES TO THE TUMOR NECROSIS FACTOR RECEPTOR-1

Structural Biology Knowledgebase: 1FT4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.274

Literature

Macromolecules
Sequence Display for 1FT4

Classification: SIGNALING PROTEIN

Total Structure Weight: 37128.27

Macromolecule Entities
Molecule Chains Length Organism Details
SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1 A, B 162 Homo sapiens Fragment: 55 KD EXTRACELLULAR DOMAIN (MET PLUS RESIDUES 12-272)
Details: N OF ALA 62, CHAIN A IS BOUND TO LIGAND 705
Gene Name(s): TNFRSF1A Gene View TNFAR TNFR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
703
Query on 703

A 5-(3-MORPHOLIN-4-YL-PROPYL)-2-(3-NITRO-PHENYL)- 4-THIOXO-4,5-DIHYDRO-1-THIA-3B,5-DIAZA-CYCLOPENTA[A]PENTALEN- 6-ONE
6, (Synonym)
C21 H20 N4 O4 S2
UXGUZFZBZPPZGL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
703 N/A in BindingDB
N/A in BindingMoad
IC50: 270 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Observed:
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 67.80 α = 90.00
b = 67.80 β = 90.00
c = 190.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-11
  • Released Date: 2001-10-12
  • Deposition author(s): Muckelbauer, J.K., Chang, C.-H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4