1FRT

CRYSTAL STRUCTURE OF THE COMPLEX OF RAT NEONATAL FC RECEPTOR WITH FC

Structural Biology Knowledgebase: 1FRT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.5 Å
  • R-Value Observed: 0.423

Literature

Macromolecules
Sequence Display for 1FRT

Classification: COMPLEX (RECEPTOR / IMMUNOGLOBULIN)

Total Structure Weight: 67612.34

Macromolecule Entities
Molecule Chains Length Organism Details
NEONATAL FC RECEPTOR A 269 Rattus norvegicus Gene Name(s): Fcgrt Fcrn
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA 2-MICROGLOBULIN B 99 Rattus norvegicus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IGG FC C 205 Rattus norvegicus Mutation: E272Q, E283Q, E294Q, D312N, N315D, D356E, L358M

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

C BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

C BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A, C ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.5 Å
  • R-Value Observed: 0.423
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 125.00 α = 90.00
b = 145.00 β = 90.00
c = 216.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-11-11
  • Released Date: 1995-02-14
  • Deposition author(s): Burmeister, W.P., Bjorkman, P.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update