1FN1

CRYSTAL STRUCTURE OF 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5BR)UACG)2

Structural Biology Knowledgebase: 1FN1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1FN1

Classification: DNA

Total Structure Weight: 3913.32

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*GP*(BRO)UP*AP*CP*G)-3') A 5 synthetic KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION
DNA (5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3') B 6 synthetic KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8AD
Query on 8AD

A 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE- 4-CARBOXAMIDE
C20 H24 N4 O
AMFZHKPIXJORQY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

A, B COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
A, B DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.230
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 28.88 α = 90.00
b = 53.17 β = 90.00
c = 40.42 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-08-19
  • Released Date: 2000-10-30
  • Deposition author(s): Adams, A., Guss, J.M., Collyer, C.A., Denny, W.A., Wakelin, L.P.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4