1FL6

THE HAPTEN COMPLEXED GERMLINE PRECURSOR TO SULFIDE OXIDASE CATALYTIC ANTIBODY 28B4

Structural Biology Knowledgebase: 1FL6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1FL6

Classification: IMMUNE SYSTEM

Total Structure Weight: 95044.48

Macromolecule Entities
Molecule Chains Length Organism Details
ANTIBODY GERMLINE PRECURSOR TO 28B4 A, L 217 Mus musculus Fragment: LIGHT CHAIN (CHAINS L AND A)
ANTIBODY GERMLINE PRECURSOR TO 28B4 B, H 219 Homo sapiens Fragment: HEAVY CHAIN (CHAINS H AND B)

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AAH
Query on AAH

B, H 1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO]METHYLPHOSPHONIC ACID
C13 H19 N2 O7 P
RWVBLRUMXIXUAR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AAH N/A in BindingDB
N/A in BindingMoad
Kd: 37 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.216
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.46 α = 90.00
b = 127.61 β = 104.62
c = 65.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-11
  • Released Date: 2001-11-14
  • Deposition author(s): Yin, J., Mundorff, E.C., Yang, P.L., Wendt, K.U., Hanway, D., Stevens, R.C., Schultz, P.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4