1FD0

ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARGAMMA-SELECTIVE RETINOID SR11254


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.130

Literature

Macromolecules
Sequence Display for 1FD0

Classification: GENE REGULATION

Total Structure Weight: 27447.18

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR GAMMA-1 A 235 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Details: COMPLEXED WITH SR11254, RESIDUE 254
Gene Name(s): RARG Gene View NR1B3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMU
Query on LMU

A DODECYL-ALPHA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-YHBSTRCHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
254
Query on 254

A 6-[HYDROXYIMINO-(5,5,8,8-TETRAMETHYL-5,6,7,8- TETRAHYDRO-NAPHTALEN-2-YL)-METHYL]-NAPHTALENE- 2-CARBOXYLIC ACID
SR11254 (Synonym)
C26 H27 N O3
RNZIUDLOJHVHLZ-SLEBQGDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
254 N/A in BindingDB
Kd: 4 nM  BindingMOAD
Kd: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.158
  • R-Value Work: 0.130
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.79 α = 90.00
b = 59.79 β = 90.00
c = 155.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-19
  • Released Date: 2002-09-27
  • Deposition author(s): Klaholz, B.P., Moras, D., Structural Proteomics in Europe (SPINE)

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance