1FCY

ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARBETA/GAMMA-SELECTIVE RETINOID CD564

Structural Biology Knowledgebase: 1FCY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.133

Literature

Macromolecules
Sequence Display for 1FCY

Classification: GENE REGULATION

Total Structure Weight: 27503.40

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR GAMMA-1 A 236 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Mutation: L182A
Details: COMPLEXED WITH CD564, RESIDUE 564
Gene Name(s): RARG Gene View NR1B3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMU
Query on LMU

A DODECYL-ALPHA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-YHBSTRCHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
564
Query on 564

A 6-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO- NAPHTALENE-2-CARBONYL)-NAPHTALENE-2-CARBOXYLIC ACID
CD564 (Synonym)
C26 H26 O3
RWYREGSYPCNZTL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
564 Kd: 1.2 - 3 nM (90 - 100) BindingDB

Kd: 3 nM  BindingMOAD
Kd: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.133
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.85 α = 90.00
b = 59.85 β = 90.00
c = 155.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-19
  • Released Date: 2000-09-11
  • Deposition author(s): Klaholz, B.P., Mitschler, A., Moras, D., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4