1FBL

STRUCTURE OF FULL-LENGTH PORCINE SYNOVIAL COLLAGENASE (MMP1) REVEALS A C-TERMINAL DOMAIN CONTAINING A CALCIUM-LINKED, FOUR-BLADED BETA-PROPELLER

Structural Biology Knowledgebase: 1FBL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.217

Literature

Macromolecules
Sequence Display for 1FBL

Classification: METALLOPROTEASE

Total Structure Weight: 43359.33

Macromolecule Entities
Molecule Chains Length Organism Details
FIBROBLAST (INTERSTITIAL) COLLAGENASE (MMP-1) A 370 Sus scrofa EC#: 3.4.24.7 IUBMB
Gene Name(s): MMP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HTA
Query on HTA

A N-[3-(N'-HYDROXYCARBOXAMIDO)-2-(2-METHYLPROPYL)- PROPANOYL]-O-TYROSINE-N-METHYLAMIDE
C19 H29 N3 O5
QYZPDCGWIJYZMN-ZBFHGGJFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HTA IC50: 1.9 - 20 nM (87) BindingDB
Ki: <1 - 10 nM (87) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.217
  • Space Group: I 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 161.14 α = 90.00
b = 161.14 β = 90.00
c = 52.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-04-24
  • Released Date: 1996-01-29
  • Deposition author(s): Li, J., Brick, P., Blow, D.M.

Revision History

  • 2012-02-22
    Type: Citation | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4