1F9O

Crystal structure of the cellulase Cel48F from C. Cellulolyticum with the thiooligosaccharide inhibitor PIPS-IG3

Structural Biology Knowledgebase: 1F9O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1F9O

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 72427.81

Macromolecule Entities
Molecule Chains Length Organism Details
ENDO-1,4-BETA-GLUCANASE F A 629 [clostridium] cellulolyticum EC#: 3.2.1.4 IUBMB
Fragment: CATALYTIC MODULE
Gene Name(s): celCCF Ccel_0729
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SSG
Query on SSG

A 1,4-DEOXY-1,4-DITHIO-BETA-D-GLUCOPYRANOSE
C6 H12 O4 S2
MUOMBPNNVXJUGT-UKFBFLRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PIH
Query on PIH

A IODOPHENYL
C6 H5 I
SNHMUERNLJLMHN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.179
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.60 α = 90.00
b = 84.57 β = 90.00
c = 121.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-11
  • Released Date: 2000-08-02
  • Deposition author(s): Parsiegla, G., Reverbel-Leroy, C., Tardif, C., Belaich, J.P., Driguez, H., Haser, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4