1F8V

THE STRUCTURE OF PARIACOTO VIRUS REVEALS A DODECAHEDRAL CAGE OF DUPLEX RNA

Structural Biology Knowledgebase: 1F8V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1F8V

Classification: Virus / RNA [ VIPERdb ]

Total Structure Weight: 8152813.00


Macromolecule Entities
Molecule Chains Length Organism Details
MATURE CAPSID PROTEIN BETA A, B, C 355 Pariacoto virus Gene Name(s): alpha
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MATURE CAPSID PROTEIN GAMMA D, E, F 40 Pariacoto virus Gene Name(s): alpha
Macromolecule Entities
Molecule Chains Length Organism Details
RNA R 25 Pariacoto virus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.219
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 329.33 α = 90.00
b = 346.94 β = 90.83
c = 424.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-05
  • Released Date: 2000-12-06
  • Deposition author(s): Tang, L., Johnson, K.N., Ball, L.A., Lin, T., Yeager, M., Johnson, J.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4