1F6M

CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THIOREDOXIN REDUCTASE, THIOREDOXIN, AND THE NADP+ ANALOG, AADP+

Structural Biology Knowledgebase: 1F6M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1F6M

Classification: OXIDOREDUCTASE

Total Structure Weight: 190749.56

Macromolecule Entities
Molecule Chains Length Organism Details
THIOREDOXIN REDUCTASE A, B, E, F 320 Escherichia coli EC#: 1.8.1.9 IUBMB
Mutation: C135S
Gene Name(s): trxB b0888 JW0871
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
THIOREDOXIN 1 C, D, G, H 108 Escherichia coli Mutation: C35S
Gene Name(s): trxA fipA tsnC b3781 JW5856
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, E, F FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3AA
Query on 3AA

A, B, E, F 3-AMINOPYRIDINE-ADENINE DINUCLEOTIDE PHOSPHATE
ADENOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) 2'- (DIHYDROGEN PHOSPHATE)ESTER WITH 3-(AMINO)- 1-BETA-D-RIBOFURANOSYLPYRIDINIUM INNER SALT (Synonym)
C20 H29 N7 O16 P3
JRGQEVHOKKZPIX-HISDBWNOSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.205
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 298.93 α = 90.00
b = 94.83 β = 104.18
c = 79.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-22
  • Released Date: 2000-08-30
  • Deposition author(s): Lennon, B.W., Williams Jr., C.H., Ludwig, M.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4