1F5T

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 1F5T

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 82638.63


Macromolecule Entities
Molecule Chains Length Organism Details
DIPHTHERIA TOXIN REPRESSOR A, B, C, D 121 Corynebacterium diphtheriae Mutation: C1102D
Gene Name(s): dtxR DIP1414
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE E 43 synthetic
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE F 43 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B, C, D NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.245
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 116.18 α = 90.00
b = 116.18 β = 90.00
c = 142.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-15
  • Released Date: 2000-09-25
  • Deposition author(s): Chen, S., White, A., Love, J., Murphy, J.R., Ringe, D.

Revision History

  • Version 1_0: 2000-09-25

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance