1F5N

HUMAN GUANYLATE BINDING PROTEIN-1 IN COMPLEX WITH THE GTP ANALOGUE, GMPPNP.

Structural Biology Knowledgebase: 1F5N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1F5N

Classification: SIGNALING PROTEIN

Total Structure Weight: 68550.79

Macromolecule Entities
Molecule Chains Length Organism Details
INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1 A 592 Homo sapiens EC#: 3.6.5 IUBMB
Gene Name(s): GBP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.226
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 161.23 α = 90.00
b = 42.65 β = 100.19
c = 91.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-15
  • Released Date: 2000-09-27
  • Deposition author(s): Prakash, B., Renault, L., Praefcke, G.J.K., Herrmann, C., Wittinghofer, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4