1F42

THE P40 DOMAIN OF HUMAN INTERLEUKIN-12

Structural Biology Knowledgebase: 1F42 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 1F42

Classification: CYTOKINE

Total Structure Weight: 35725.12

Macromolecule Entities
Molecule Chains Length Organism Details
INTERLEUKIN-12 BETA CHAIN A 306 Homo sapiens Fragment: RESIDUES 23-328
Gene Name(s): IL12B Gene View NKSF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MNB
Query on MNB

A 5-MERCAPTO-2-NITRO-BENZOIC ACID
C7 H5 N O4 S
GANZODCWZFAEGN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.227
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 34.00 α = 90.00
b = 55.00 β = 90.00
c = 189.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-07
  • Released Date: 2001-06-13
  • Deposition author(s): Yoon, C., Johnston, S.C., Tang, J., Tobin, J.F., Somers, W.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update