1F2O

CRYSTAL STRUCTURE OF THE STREPTOMYCES GRISEUS AMINOPEPTIDASE COMPLEXED WITH L-LEUCINE

Structural Biology Knowledgebase: 1F2O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.147

Literature

Macromolecules
Sequence Display for 1F2O

Classification: HYDROLASE

Total Structure Weight: 30052.92

Macromolecule Entities
Molecule Chains Length Organism Details
AMINOPEPTIDASE A 284 Streptomyces griseus EC#: 3.4.11.24 IUBMB
Gene Name(s): SGR_5809
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LEU
Query on LEU

A LEUCINE
C6 H13 N O2
ROHFNLRQFUQHCH-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LEU N/A in BindingDB
Ki: 12400000 nM  BindingMOAD
Ki: 12400000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.147
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 61.99 α = 90.00
b = 61.99 β = 90.00
c = 146.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-28
  • Released Date: 2001-08-22
  • Deposition author(s): Gilboa, R., Spungin-Bialik, A., Wohlfahrt, G., Schomburg, D., Blumberg, S., Shoham, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4