1F1V

ANAEROBIC SUBSTRATE COMPLEX OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS. (COMPLEX WITH 3,4-DIHYDROXYPHENYLACETATE)

Structural Biology Knowledgebase: 1F1V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 1F1V

Classification: OXIDOREDUCTASE

Total Structure Weight: 74431.47

Macromolecule Entities
Molecule Chains Length Organism Details
HOMOPROTOCATECHUATE 2,3-DIOXYGENASE A, B 323 Arthrobacter globiformis EC#: 1.13.11.15 IUBMB
Mutation: R234A, P235L, C236R, A237I, A239D, T240R, G241I, S242E, N243R, R246G, P247R, A248H, P249G
Gene Name(s): mndD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DHY
Query on DHY

A, B 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID
C8 H8 O4
CFFZDZCDUFSOFZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.166
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 139.42 α = 90.00
b = 59.30 β = 118.39
c = 103.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-20
  • Released Date: 2003-06-10
  • Deposition author(s): Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values