1F09

CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES

Structural Biology Knowledgebase: 1F09 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Observed: 0.204

Literature

Macromolecules
Sequence Display for 1F09

Classification: Luminescent Protein

Total Structure Weight: 27205.43

Macromolecule Entities
Molecule Chains Length Organism Details
GREEN FLUORESCENT PROTEIN A 238 Aequorea victoria Mutation: S66X, Y66X, G66X, V68L, S72A, Q80R, H148Q, T203Y
Gene Name(s): GFP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CR2
Query on CR2
A L-PEPTIDE LINKING C13 H13 N3 O4 GLY , TYR , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Observed: 0.204
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.20 α = 90.00
b = 62.82 β = 90.00
c = 68.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-15
  • Released Date: 2000-11-17
  • Deposition author(s): Wachter, R.M., Yarbrough, D., Kallio, K., Remington, S.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4