1EXV

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-403,700

Structural Biology Knowledgebase: 1EXV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1EXV

Classification: TRANSFERASE

Total Structure Weight: 196579.27

Macromolecule Entities
Molecule Chains Length Organism Details
LIVER GLYCOGEN PHOSPHORYLASE A, B 847 Homo sapiens EC#: 2.4.1.1 IUBMB
Mutation: S569R
Gene Name(s): PYGL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
700
Query on 700

A, B [5-CHLORO-1H-INDOL-2-CARBONYL-PHENYLALANINYL]- AZETIDINE-3-CARBOXYLIC ACID
CP403700, (S)-1-{2-[(5-CHLORO-1H-INDOLE-2- CARBONYL)-AMINO]-3-PHENYL-PROPIONYL}-AZETIDINE- 3-CARBOXYLATE (Synonym)
C22 H20 Cl N3 O4
RONLONYAIBUEKT-IBGZPJMESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NBG
Query on NBG

A, B 1-N-ACETYL-BETA-D-GLUCOSAMINE
C8 H15 N O6
IBONACLSSOLHFU-JAJWTYFOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
700 IC50: 45 nM (100) BindingDB

IC50: 45 nM  BindingMOAD
IC50: 45 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.236
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 124.63 α = 90.00
b = 124.63 β = 90.00
c = 124.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-04
  • Released Date: 2000-11-01
  • Deposition author(s): Rath, V.L., Ammirati, M., Danley, D.E., Ekstrom, J.L., Hynes, T.R., Olson, T.V., Hoover, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update