1EXA

ENANTIOMER DISCRIMINATION ILLUSTRATED BY CRYSTAL STRUCTURES OF THE HUMAN RETINOIC ACID RECEPTOR HRARGAMMA LIGAND BINDING DOMAIN: THE COMPLEX WITH THE ACTIVE R-ENANTIOMER BMS270394.

Structural Biology Knowledgebase: 1EXA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1EXA

Classification: GENE REGULATION

Total Structure Weight: 28800.72

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR GAMMA-2 A 246 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Gene Name(s): RARG Gene View NR1B3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMU
Query on LMU

A DODECYL-ALPHA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-YHBSTRCHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
394
Query on 394

A R-3-FLUORO-4-[2-HYDROXY-2-(5,5,8,8-TETRAMETHYL- 5,6,7,8,-TETRAHYDRO-NAPHTALEN-2-YL)-ACETYLAMINO]- BENZOIC ACID
BMS270394 (Synonym)
C23 H26 F N O4
AANFHDFOMFRLLR-LJQANCHMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
394 Kd: 528 nM (100) BindingDB
Ki: 1.5 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.209
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.67 α = 90.00
b = 59.67 β = 90.00
c = 155.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-02
  • Released Date: 2000-06-09
  • Deposition author(s): Klaholz, B.P., Mitschler, A., Belema, M., Zusi, C., Moras, D., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4