1EVZ

CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH NAD

Structural Biology Knowledgebase: 1EVZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1EVZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 40193.98

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCEROL-3-PHOSPHATE DEHYDROGENASE A 366 Leishmania mexicana EC#: 1.1.1.8 IUBMB
Gene Name(s): GPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MYS
Query on MYS

A PENTADECANE
C15 H32
YCOZIPAWZNQLMR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.183
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 69.85 α = 90.00
b = 69.85 β = 90.00
c = 211.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-04-21
  • Released Date: 2001-02-22
  • Deposition author(s): Suresh, S., Turley, S., Opperdoes, F.R., Michels, P.A.M., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values