1EPZ

CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH BOUND LIGAND.

Structural Biology Knowledgebase: 1EPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1EPZ

Classification: ISOMERASE

Total Structure Weight: 22104.69

Macromolecule Entities
Molecule Chains Length Organism Details
DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE A 185 Methanothermobacter thermautotrophicus EC#: 5.1.3.13 IUBMB
Gene Name(s): rmlC MTH_1790
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TYD
Query on TYD

A THYMIDINE-5'-DIPHOSPHATE
C10 H16 N2 O11 P2
UJLXYODCHAELLY-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.196
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 68.16 α = 90.00
b = 53.49 β = 97.22
c = 51.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-30
  • Released Date: 2000-12-13
  • Deposition author(s): Christendat, D., Saridakis, V., Bochkarev, A., Pai, E.F., Arrowsmith, C., Edwards, A.M.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4