1EHZ

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution

Structural Biology Knowledgebase: 1EHZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1EHZ

Classification: RNA

Total Structure Weight: 25200.94

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSFER RNA (PHE) A 76 Saccharomyces cerevisiae

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 11 Unique
ID Chains Type Formula 2D Diagram Parent
2MG
Query on 2MG
A RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
A RNA LINKING C9 H15 N2 O9 P U
M2G
Query on M2G
A RNA LINKING C12 H18 N5 O8 P G
OMC
Query on OMC
A RNA LINKING C10 H16 N3 O8 P C
OMG
Query on OMG
A RNA LINKING C11 H16 N5 O8 P G
YYG
Query on YYG
A RNA LINKING C21 H29 N6 O12 P G
PSU
Query on PSU
A RNA LINKING C9 H13 N2 O9 P U
5MC
Query on 5MC
A RNA LINKING C10 H16 N3 O8 P C
7MG
Query on 7MG
A RNA LINKING C11 H18 N5 O8 P G
5MU
Query on 5MU
A RNA LINKING C10 H15 N2 O9 P U
1MA
Query on 1MA
A RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.233
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.98 α = 90.00
b = 33.39 β = 90.20
c = 61.92 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-02-23
  • Released Date: 2000-10-02
  • Deposition author(s): Shi, H., Moore, P.B.

Revision History

  • 2011-12-21
    Type: Source and taxonomy | Details: --
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4