1EDH

E-CADHERIN DOMAINS 1 AND 2 IN COMPLEX WITH CALCIUM

Structural Biology Knowledgebase: 1EDH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 1EDH

Classification: CELL ADHESION PROTEIN

Total Structure Weight: 50079.03

Macromolecule Entities
Molecule Chains Length Organism Details
E-CADHERIN A, B 226 Mus musculus Gene Name(s): Cdh1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A, B MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.206
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 121.66 α = 90.00
b = 80.80 β = 116.65
c = 72.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-15
  • Released Date: 1997-01-11
  • Deposition author(s): Nagar, B., Overduin, M., Ikura, M., Rini, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4