1EBE

LAUE DIFFRACTION STUDY ON THE STRUCTURE OF CYTOCHROME C PEROXIDASE COMPOUND I

Structural Biology Knowledgebase: 1EBE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.144

Literature

Macromolecules
Sequence Display for 1EBE

Classification: OXIDOREDUCTASE

Total Structure Weight: 34205.04

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C PEROXIDASE A 294 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Mutation: N272D
Details: COMPOUND I
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O
Query on O

A OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.144
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 107.40 α = 90.00
b = 76.80 β = 90.00
c = 51.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-25
  • Released Date: 2001-07-26
  • Deposition author(s): Fulop, V., Phizackerley, R.P., Soltis, S.M., Clifton, I.J., Wakatsuki, S., Erman, J.E., Hajdu, J., Edwards, S.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4