1E9A

Human thymidylate kinase complexed with the bisubstrate inhibitor AZTP5A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1E9A

Classification: TRANSFERASE

Total Structure Weight: 25012.47

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDYLATE KINASE A 215 Homo sapiens EC#: 2.7.4.9 IUBMB
Mutation: R200A, R183S, E190D, L184I, L191I
Gene Name(s): DTYMK Gene View CDC8 TMPK TYMK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Z5A
Query on Z5A

A P1-(5'-ADENOSYL)P5-(5'-(3'AZIDO-3'-DEOXYTHYMIDYL))PENTAPHOSPHATE
C20 H24 N10 O22 P5
QNIWSXQXLJIUJW-SLFMBYJQSA-I
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.189
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 101.60 α = 90.00
b = 101.60 β = 90.00
c = 49.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-10
  • Released Date: 2001-10-05
  • Deposition author(s): Ostermann, N., Lavie, A., Padiyar, S., Brundiers, R., Veit, T., Reintein, J., Goody, R.S., Konrad, M., Schlichting, I.

Revision History

  • 2014-02-19
    Type: Database references, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance