1E7R

GDP 4-KETO-6-DEOXY-D-MANNOSE EPIMERASE REDUCTASE Y136E

Structural Biology Knowledgebase: 1E7R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.139

Literature

Macromolecules
Sequence Display for 1E7R

Classification: ISOMERASE

Total Structure Weight: 37446.16

Macromolecule Entities
Molecule Chains Length Organism Details
GDP-FUCOSE SYNTHETASE A 321 Escherichia coli EC#: 1.1.1.271 IUBMB
Mutation: Y136E, N195S
Details: UNKNOWN MOLECULE LABELED AS ACETYLPHOSPHATE
Gene Name(s): fcl wcaG yefB b2052 JW2037
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UVW
Query on UVW

A ACETYLPHOSPHATE
C2 H5 O5 P
LIPOUNRJVLNBCD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.139
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 103.30 α = 90.00
b = 103.30 β = 90.00
c = 75.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-07
  • Released Date: 2000-10-18
  • Deposition author(s): Rosano, C., Izzo, G., Bolognesi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4