1E6V

Methyl-coenzyme M reductase from Methanopyrus kandleri

Structural Biology Knowledgebase: 1E6V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1E6V

Classification: OXIDOREDUCTASE

Total Structure Weight: 282238.25

Macromolecule Entities
Molecule Chains Length Organism Details
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT A, D 553 Methanopyrus kandleri Gene Name(s): mcrA MK0655
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT B, E 443 Methanopyrus kandleri Gene Name(s): mcrB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT C, F 258 Methanopyrus kandleri Gene Name(s): mcrG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F43
Query on F43

A, D FACTOR 430
C42 H49 N6 Ni O13
GYTCYCYCZFADOK-AOPXNBHZDS
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TP7
Query on TP7

A, D Coenzyme B
7-MERCAPTOHEPTANOYLTHREONINEPHOSPHATE (Synonym)
C11 H22 N O7 P S
JBJSVEVEEGOEBZ-SCZZXKLOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
COM
Query on COM

A, D 1-THIOETHANESULFONIC ACID
C2 H6 O3 S2
ZNEWHQLOPFWXOF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.239
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.52 α = 90.00
b = 115.74 β = 90.00
c = 268.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-23
  • Released Date: 2000-10-18
  • Deposition author(s): Grabarse, W., Ermler, U.

Revision History

  • 2015-05-20
    Type: Secondary structure | Details: SHEET,HELIX
  • 2015-05-20
    Type: Other | Details: MASTER,REMARK 280
  • 2015-05-20
    Type: Biological assembly | Details: REMARK 350
  • 2015-05-20
    Type: Geometry validation | Details: REMARK 500
  • 2015-05-20
    Type: Function and keywords | Details: KEYWDS
  • 2015-05-20
    Type: Citation | Details: JRNL
  • 2015-05-20
    Type: Non-polymer description | Details: HETSYN,FORMUL,REMARK 620,HETNAM
  • 2015-05-20
    Type: Linkage | Details: LINK
  • 2015-05-20
    Type: Version format compliance | Details: REMARK 4