1E60

OXIDIZED DMSO REDUCTASE EXPOSED TO HEPES - STRUCTURE II BUFFER

Structural Biology Knowledgebase: 1E60 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1E60

Classification: OXIDOREDUCTASE

Total Structure Weight: 182647.55

Macromolecule Entities
Molecule Chains Length Organism Details
DMSO REDUCTASE A, C 823 Rhodobacter capsulatus EC#: 1.7.2.3 IUBMB 1.8.5.3 IUBMB
Mutation: T39S, E43A, Q107E, D234E, V236I, M280D, S294E, D295G, I312E, S374A, I456V, K526A
Gene Name(s): dorA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGD
Query on PGD

A, C 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9- TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN- 4-ONE GUANOSINE DINUCLEOTIDE
C20 H24 N10 O13 P2 S2
SOFMTHSWCZNJTQ-ILXWUORBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2MO
Query on 2MO

A, C MOLYBDENUM (IV)OXIDE
Mo O2
QXYJCZRRLLQGCR-OMUOWVJPAU
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 68.55 α = 90.00
b = 115.92 β = 90.00
c = 229.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-06
  • Released Date: 2000-08-25
  • Deposition author(s): Bailey, S., Bennett, B., Adams, B., Smith, A.T., Bray, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4