1E42

BETA2-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2

Structural Biology Knowledgebase: 1E42 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1E42

Classification: ENDOCYTOSIS

Total Structure Weight: 58963.71

Macromolecule Entities
Molecule Chains Length Organism Details
AP-2 COMPLEX SUBUNIT BETA A, B 258 Homo sapiens Fragment: APPENDAGE DOMAIN, RESIDUES 701-937
Gene Name(s): AP2B1 Gene View ADTB2 CLAPB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTD
Query on DTD

A, B DITHIANE DIOL
C4 H8 O2 S2
YPGMOWHXEQDBBV-IMJSIDKUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.196
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.04 α = 90.00
b = 124.59 β = 124.18
c = 67.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-27
  • Released Date: 2000-08-21
  • Deposition author(s): Owen, D.J., Evans, P.R., Mcmahon, H.T.

Revision History

  • 2011-08-24
    Type: Polymer description | Details: COMPND
  • 2011-08-24
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-08-24
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-24
    Type: Other | Details: REMARK 465,REMARK 525,REMARK 280
  • 2011-08-24
    Type: Sequence database correspondence | Details: SEQADV,DBREF
  • 2011-08-24
    Type: Geometry validation | Details: REMARK 500