1E3Z

ACARBOSE COMPLEX OF CHIMAERIC AMYLASE FROM B. AMYLOLIQUEFACIENS AND B. LICHENIFORMIS AT 1.93A

Structural Biology Knowledgebase: 1E3Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.130

Literature

Macromolecules
Sequence Display for 1E3Z

Classification: HYDROLASE

Total Structure Weight: 56804.96

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-AMYLASE A 483 Bacillus amyloliquefaciens EC#: 3.2.1.1 IUBMB
Details: CHIMAERIC STRUCTURE CONSISTING OF RESIDUES 1 - 300 OF B. AMYLOLIQUEFACIENS AND RESIDUES 301 - 483 OF B. LICHENIFORMIS IN COMPLEX WITH ACARBOSE
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACI
Query on ACI

A 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3- TRIOL
C7 H13 N O4
XPHOBMULWMGEBA-VZFHVOOUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLD
Query on GLD

A 4,6-DIDEOXYGLUCOSE
C6 H12 O4
BJBURJZEESAQPG-MOJAZDJTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.130
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 52.72 α = 90.00
b = 78.27 β = 90.00
c = 238.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-27
  • Released Date: 2001-06-21
  • Deposition author(s): Brzozowski, A.M., Lawson, D.M., Turkenburg, J.P., Bisgaard-Frantzen, H., Svendsen, A., Borchert, T.V., Dauter, Z., Wilson, K.S., Davies, G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4