1E3W

RAT BRAIN 3-HYDROXYACYL-COA DEHYDROGENASE BINARY COMPLEX WITH NADH AND 3-KETO BUTYRATE

Structural Biology Knowledgebase: 1E3W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1E3W

Classification: DEHYDROGENASE

Total Structure Weight: 112665.20

Macromolecule Entities
Molecule Chains Length Organism Details
SHORT CHAIN 3-HYDROXYACYL-COA DEHYDROGENASE A 261 Rattus norvegicus EC#: 1.1.1.35 IUBMB
Gene Name(s): Hsd17b10 Erab Hadh2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SHORT CHAIN 3-HYDROXYACYL-COA DEHYDROGENASE B, C, D 261 Rattus norvegicus EC#: 1.1.1.35 IUBMB
Gene Name(s): Hsd17b10 Erab Hadh2

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

L 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AAE
Query on AAE

L ACETOACETIC ACID
C4 H6 O3
WDJHALXBUFZDSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.189
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 57.60 α = 65.22
b = 67.43 β = 73.27
c = 67.50 γ = 75.67

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-26
  • Released Date: 2001-05-25
  • Deposition author(s): Powell, A.J., Read, J.A., Brady, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4