1E1T

LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH THE LYSYL_ADENYLATE INTERMEDIATE

Structural Biology Knowledgebase: 1E1T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1E1T

Classification: LIGASE

Total Structure Weight: 59112.46

Macromolecule Entities
Molecule Chains Length Organism Details
LYSYL-TRNA SYNTHETASE, HEAT INDUCIBLE A 504 Escherichia coli EC#: 6.1.1.6 IUBMB
Gene Name(s): lysU b4129 JW4090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LAD
Query on LAD

B ADENOSINE-5'-[LYSYL-PHOSPHATE]
C16 H26 N7 O8 P
RZWIOOBQBMRZTQ-OPYVMVOTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
POP
Query on POP

B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.186
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 143.10 α = 90.00
b = 143.10 β = 90.00
c = 176.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-10
  • Released Date: 2000-07-28
  • Deposition author(s): Desogus, G., Todone, F., Brick, P., Onesti, S.

Revision History

  • 2011-08-24
    Type: Other | Details: REMARK 525
  • 2011-08-24
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-08-24
    Type: Geometry validation | Details: REMARK 500
  • 2011-08-24
    Type: Polymer description | Details: COMPND
  • 2011-08-24
    Type: Sequence database correspondence | Details: DBREF
  • 2011-08-24
    Type: Data collection | Details: REMARK 200
  • 2011-08-24
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-24
    Type: Source and taxonomy | Details: SOURCE