1E1D

HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Structural Biology Knowledgebase: 1E1D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1E1D

Classification: OXIDOREDUCTASE

Total Structure Weight: 60948.74

Macromolecule Entities
Molecule Chains Length Organism Details
HYDROXYLAMINE REDUCTASE A 553 Desulfovibrio vulgaris EC#: 1.7.99.1 IUBMB
Gene Name(s): hcp DVU_2013
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FSO
Query on FSO

A IRON/SULFUR/OXYGEN HYBRID CLUSTER
Fe4 O3 S3
NIIPGMCXXHQOSA-LVFFOBLJCB
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

A IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.171
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.50 α = 90.00
b = 65.50 β = 90.00
c = 155.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-02
  • Released Date: 2000-06-21
  • Deposition author(s): Arendsen, A.F., Cooper, S.J., Bailey, S., Garner, C.D., Hagen, W.R., Lindley, P.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4