1DZQ

LECTIN UEA-II COMPLEXED WITH GALACTOSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1DZQ

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 105997.24

Macromolecule Entities
Molecule Chains Length Organism Details
LECTIN II A, B, C, D 242 Ulex europaeus Mutation: A25D, T62I, S106G, N112S, E191G, I229V
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, C BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.186
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 104.87 α = 90.00
b = 104.87 β = 90.00
c = 175.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-07
  • Released Date: 2000-06-22
  • Deposition author(s): Loris, R., De Greve, H., Dao-Thi, M.-H., Messens, J., Imberty, A., Wyns, L.

Revision History

  • Version 1_0: 2000-06-22

    Type: Initial release

  • Version 1_1: 2011-08-24

    Type: Database references, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance