1DYT

X-RAY CRYSTAL STRUCTURE OF ECP (RNASE 3) AT 1.75 A

Structural Biology Knowledgebase: 1DYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1DYT

Classification: HYDROLASE

Total Structure Weight: 32078.14

Macromolecule Entities
Molecule Chains Length Organism Details
EOSINOPHIL CATIONIC PROTEIN A, B 133 Homo sapiens EC#: 3.1.27 IUBMB
Gene Name(s): RNASE3 Gene View ECP RNS3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.224
  • Space Group: P 43 2 2

Unit Cell:

Length (Å) Angle (°)
a = 62.16 α = 90.00
b = 62.16 β = 90.00
c = 174.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-08
  • Released Date: 2001-02-08
  • Deposition author(s): Mallorqui-Fernandez, G., Pous, J., Peracaula, R., Maeda, T., Tada, H., Yamada, H., Seno, M., De Llorens, R., Gomis-Rueth, F.X., Coll, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4