1DYP

1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE 4 GALACTOHYDROLASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1DYP

Classification: HYDROLASE

Total Structure Weight: 32594.39

Macromolecule Entities
Molecule Chains Length Organism Details
KAPPA-CARRAGEENASE A 271 Pseudoalteromonas carrageenovora EC#: 3.2.1.83 IUBMB
Fragment: CATALYTIC DOMAIN
Mutation: N78K, M28M, M145M, M195M, M251M, M286M
Details: COMPLEXED WITH CADMIUM CHLORIDE
Gene Name(s): cgkA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.178
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.41 α = 90.00
b = 61.12 β = 90.00
c = 75.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-04
  • Released Date: 2001-01-16
  • Deposition author(s): Michel, G., Chantalat, L., Dideberg, O.

Revision History

  • 2011-05-07
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance