1DYK

LAMININ ALPHA 2 CHAIN LG4-5 DOMAIN PAIR

Structural Biology Knowledgebase: 1DYK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1DYK

Classification: METAL BINDING PROTEIN

Total Structure Weight: 42824.13

Macromolecule Entities
Molecule Chains Length Organism Details
LAMININ ALPHA 2 CHAIN A 394 Mus musculus Fragment: LAMININ G-LIKE DOMAIN 4-5 PAIR
Mutation: V2773A, G2802A, G2810A, F2820Y, S2829D, R2831S, G2878V, G2946A, I2953K, I2976V, Y3022H, A3094G
Gene Name(s): Lama2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.233
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.60 α = 90.00
b = 111.50 β = 90.00
c = 124.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-01
  • Released Date: 2001-02-04
  • Deposition author(s): Tisi, D., Talts, J.F., Timple, R., Hohenester, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4