1DY2

MURINE COLLAGEN ALPHA1(XV), ENDOSTATIN DOMAIN

Structural Biology Knowledgebase: 1DY2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1DY2

Classification: ANGIOGENESIS INHIBITOR

Total Structure Weight: 20182.09

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGEN ALPHA1(XV) CHAIN A 180 Mus musculus Fragment: ENDOSTATIN DOMAIN
Gene Name(s): Col15a1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 33.55 α = 90.00
b = 57.70 β = 90.00
c = 71.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-21
  • Released Date: 2001-01-21
  • Deposition author(s): Tisi, D., Hohenester, E., Sasaki, T., Timpl, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4