1DVL

CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END

Structural Biology Knowledgebase: 1DVL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1DVL

Classification: DNA

Total Structure Weight: 6374.33

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3' A, B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NT
Query on NT

A NETROPSIN
C18 H26 N10 O3
IDBIFFKSXLYUOT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.196
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 62.40 α = 90.00
b = 24.47 β = 110.09
c = 36.31 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-01-21
  • Released Date: 2002-03-29
  • Deposition author(s): Shi, K., Mitra, S.N., Sundaralingam, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4