1DV8

CRYSTAL STRUCTURE OF THE CARBOHYDRATE RECOGNITION DOMAIN OF THE H1 SUBUNIT OF THE ASIALOGLYCOPROTEIN RECEPTOR

Structural Biology Knowledgebase: 1DV8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1DV8

Classification: SIGNALING PROTEIN

Total Structure Weight: 15321.29

Macromolecule Entities
Molecule Chains Length Organism Details
ASIALOGLYCOPROTEIN RECEPTOR 1 A 128 Homo sapiens Fragment: CARBOHYDRATE RECOGNITION DOMAIN - H1 SUBUNIT
Gene Name(s): ASGR1 Gene View CLEC4H1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.195
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.72 α = 90.00
b = 32.46 β = 91.29
c = 40.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-20
  • Released Date: 2000-07-26
  • Deposition author(s): Meier, M., Bider, M.D., Malashkevich, V.N., Spiess, M., Burkhard, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4