1DUW

STRUCTURE OF NONAHEME CYTOCHROME C

Structural Biology Knowledgebase: 1DUW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1DUW

Classification: ELECTRON TRANSPORT

Total Structure Weight: 37368.04

Macromolecule Entities
Molecule Chains Length Organism Details
NONAHEME CYTOCHROME C A 292 Desulfovibrio desulfuricans Gene Name(s): hmcA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.183
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.40 α = 90.00
b = 55.40 β = 90.00
c = 236.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-19
  • Released Date: 2001-03-21
  • Deposition author(s): Umhau, S., Fritz, G., Diederichs, K., Breed, J., Kroneck, P.M., Welte, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values