1DUC

EIAV DUTPASE DUDP/STRONTIUM COMPLEX

Structural Biology Knowledgebase: 1DUC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 1DUC

Classification: HYDROLASE

Total Structure Weight: 15260.74

Macromolecule Entities
Molecule Chains Length Organism Details
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE A 134 Equine infectious anemia virus EC#: 3.6.1.23 IUBMB
Details: COMPLEX WITH DUDP AND STRONTIUM(II) ION
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DUD
Query on DUD

A DEOXYURIDINE-5'-DIPHOSPHATE
C9 H14 N2 O11 P2
QHWZTVCCBMIIKE-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SR
Query on SR

A STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.167
  • Space Group: P 41 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.70 α = 90.00
b = 106.70 β = 90.00
c = 106.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-11-29
  • Released Date: 1998-06-03
  • Deposition author(s): Dauter, Z., Persson, R., Rosengren, A.M., Nyman, P.O., Wilson, K.S., Cedergren-Zeppezauer, E.S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4