1DU3

Crystal structure of TRAIL-SDR5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.291

Literature

Macromolecules
Sequence Display for 1DU3

Classification: APOPTOSIS

Total Structure Weight: 204727.08

Macromolecule Entities
Molecule Chains Length Organism Details
DEATH RECEPTOR 5 A, B, C..., G, H, IA, B, C, G, H, I 130 Homo sapiens Fragment: EXTRACELLULAR DOMAIN
Gene Name(s): TNFRSF10B Gene View DR5 KILLER TRAILR2 TRICK2 ZTNFR9 UNQ160/PRO186
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TNF-RELATED APOPTOSIS INDUCING LIGAND D, E, F..., J, K, LD, E, F, J, K, L 168 Homo sapiens Gene Name(s): TNFSF10 Gene View APO2L TRAIL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

E, K ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.291
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.63 α = 90.00
b = 124.81 β = 104.49
c = 128.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-14
  • Released Date: 2000-09-27
  • Deposition author(s): Cha, S.-S., Sung, B.-J., Oh, B.-H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4