1DSR

Peptide antibiotic, NMR, 6 structures

Structural Biology Knowledgebase: 1DSR SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 450
  • Conformers Submitted: 6
  • Selection Criteria: Energy Minimized Snapshot Every 75 Ps

Literature

Macromolecules
Sequence Display for 1DSR

Classification: ANTIBIOTIC

Total Structure Weight: 2608.14

Macromolecule Entities
Molecule Chains Length Organism Details
RAMOPLANIN A2 A 17 Actinoplanes sp.

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FA7
Query on FA7

A (2Z,4E)-7-methylocta-2,4-dienoic acid
C9 H14 O2
ZPJFGJWTSDWBST-BZDQXIRASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000222
Query on PRD_000222
A RAMOPLANIN A2 Lipoglycopeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 450
  • Conformers Submitted: 6
  • Selection Criteria: ENERGY MINIMIZED SNAPSHOT EVERY 75 PS

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-05
  • Released Date: 1997-02-12
  • Deposition author(s): Kurz, M., Guba, W.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4