1DSM

(-)-duocarmycin SA covalently linked to duplex DNA

Structural Biology Knowledgebase: 1DSM SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 20
  • Selection Criteria: Lowest Restraint Violations

Literature

Macromolecules
Sequence Display for 1DSM

Classification: DNA

Total Structure Weight: 7184.98

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3' A 11 synthetic
5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DSA
Query on DSA

A 4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H- INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6- DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
(+)DUOCARMYCIN SA (Synonym)
C25 H25 N3 O7
JMVYAMWFXLCMJM-NSHDSACASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 20
  • Selection Criteria: LOWEST RESTRAINT VIOLATIONS

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-03-27
  • Released Date: 1999-04-02
  • Deposition author(s): Smith, J.A., Case, D.A., Chazin, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4