1DS5

DIMERIC CRYSTAL STRUCTURE OF THE ALPHA SUBUNIT IN COMPLEX WITH TWO BETA PEPTIDES MIMICKING THE ARCHITECTURE OF THE TETRAMERIC PROTEIN KINASE CK2 HOLOENZYME.

Structural Biology Knowledgebase: 1DS5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1DS5

Classification: TRANSFERASE

Total Structure Weight: 169717.34

Macromolecule Entities
Molecule Chains Length Organism Details
CASEIN KINASE, ALPHA CHAIN A, B, C, D 332 Zea mays EC#: 2.7.11.1 IUBMB
Gene Name(s): ACK2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CASEIN KINASE, BETA CHAIN E, F, G, H 23 Homo sapiens EC#: 2.7.1.37 IUBMB
Fragment: RESIDUES 181-203
Gene Name(s): CSNK2B Gene View CK2N G5A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A, B, C, D ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.214
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 87.68 α = 90.00
b = 119.85 β = 90.00
c = 145.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-07
  • Released Date: 2001-01-07
  • Deposition author(s): Battistutta, R., Sarno, S., De Moliner, E., Marin, O., Zanotti, G., Pinna, L.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4