1DRT

CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND PROCLAVAMINIC ACID

Structural Biology Knowledgebase: 1DRT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1DRT

Classification: OXIDOREDUCTASE LYASE

Total Structure Weight: 35820.24

Macromolecule Entities
Molecule Chains Length Organism Details
CLAVAMINATE SYNTHASE 1 A 324 Streptomyces clavuligerus EC#: 1.14.11.21 IUBMB
Fragment: CLAVAMINIC ACID SYNTHASE 1 (CAS1)
Gene Name(s): cs1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PCV
Query on PCV

A 5-AMINO-3-HYDROXY-2-(2-OXO-AZETIDIN-1-YL)- PENTANOIC ACID
PROCLAVAMINIC ACID (Synonym)
C8 H14 N2 O4
NMCINKPVAOXDJH-VDTYLAMSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AKG
Query on AKG

A 2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.219
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.48 α = 90.00
b = 68.64 β = 90.00
c = 69.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-06
  • Released Date: 2000-07-06
  • Deposition author(s): Zhang, Z.H., Ren, J., Stammers, D.K., Baldwin, J.E., Harlos, K., Schofield, C.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update