1DRM

CRYSTAL STRUCTURE OF THE LIGAND FREE BJFIXL HEME DOMAIN

Structural Biology Knowledgebase: 1DRM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1DRM

Classification: TRANSFERASE

Total Structure Weight: 15536.48

Macromolecule Entities
Molecule Chains Length Organism Details
SENSOR PROTEIN FIXL A 131 Bradyrhizobium japonicum EC#: 2.7.13.3 IUBMB
Fragment: HEME DOMAIN
Mutation: T140M
Gene Name(s): fixL bll2760
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.199
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 128.80 α = 90.00
b = 128.80 β = 90.00
c = 58.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-06
  • Released Date: 2000-01-24
  • Deposition author(s): Gong, W., Hao, B., Mansy, S.S., Gonzalez, G., Gilles-Gonzalez, M.A., Chan, M.K.
  • Previous versions: 1BV6

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4