1DP4

DIMERIZED HORMONE BINDING DOMAIN OF THE ATRIAL NATRIURETIC PEPTIDE RECEPTOR

Structural Biology Knowledgebase: 1DP4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1DP4

Classification: HORMONE / GROWTH FACTOR RECEPTOR LYASE

Total Structure Weight: 99724.98

Macromolecule Entities
Molecule Chains Length Organism Details
ATRIAL NATRIURETIC PEPTIDE RECEPTOR A A, C 435 Rattus norvegicus EC#: 4.6.1.2 IUBMB
Fragment: HORMONE BINDING DOMAIN
Gene Name(s): Npr1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.198
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 120.25 α = 90.00
b = 120.25 β = 90.00
c = 160.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-23
  • Released Date: 2000-07-12
  • Deposition author(s): van den Akker, F., Zhang, X., Miyagi, M., Huo, X., Misono, K.S., Yee, V.C.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4